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Depositing Data in Repositories: dbGaP

How to submit to dbGaP

The following instructions will guide you through the submission steps for depositing data in dbGaP. Most text has been pulled from the dbGaP submission guide page and lightly edited for clarity. Click the links to learn more about each step on the dbGaP website

  1. Register study   

  • Identify appropriate Genomic Program Administrator (GPA). Note that your GPA or NIH Program Officer assignment may differ based on whether or not your study is NIH funded. 

  • Send required documents and information to GPA 

  • GPA registers the study in dbGaP 

  • The Principal Investigator (PI) receives an “invite” from the dbGaP system (optional) 

  • PI completes the study registration in dbGaP 

  • GPA verifies the study registration information 

  1. Prepare files for submission  

  1. Check files before submission  

  1. Submit  

  1. dbGaP curators process  

  1. Receive signal and submit high throughput sequences: BAM, CRAM, FASTQ  

  1. Preview and Approve 

  • Create preview site 

  • Approve preview site  

  1. Release 

Visual Guide

dbGaP provides this step by step visual guide to the submission process, from study registration to study release

Image credit: NCBI

Videos: An Overview of the dbGaP Submission Process

dbGaP has also published the following videos guiding submitters through the depositing process. Watch them below or click the links to view them on the NLM's YouTube Channel:

  1. Register Your Study
  2. Submit Your Data
  3. Review and Release Your Study